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Basil Greber Profile
Basil Greber

@BJ_Greber

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Structural Biologist: #CryoEM #Transcription #DNArepair . MRC career development fellow/team leader at @ICR_London . Views my own. @basilgreber @mstdn .science

London, UK
Joined September 2015
Don't wanna be here? Send us removal request.
@BJ_Greber
Basil Greber
3 years
My twitter feed is a wild mix of imagery of a coup in the US and people excitedly discussing research papers.
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@BJ_Greber
Basil Greber
1 year
Behold the first pre-print from my lab at the @ICR_London ! Together with the groups of @SimakAli and @AbhayKot , we investigated inhibitor binding and selectivity for the CDK-activating kinase, an important target for future cancer drugs, using high-resolution 🍩 #cryoEM .
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@BJ_Greber
Basil Greber
4 months
Wait. Hold on. The guy who insisted that Sabatini absolutely had to be given a second chance (and offered $25 million in funding) after misconduct allegations and the guy who insisted that Claudine Gay absolutely had to leave after plagiarism allegations - is the same guy? 🀨🀨🀨
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@BJ_Greber
Basil Greber
4 years
Some good news at the end of the year: After almost 5 years in the @NogalesLab at UC Berkeley, I will move to London in mid-2020 to start my own lab at the @ICR_London . A heartfelt "thank you" to all those who supported me along the way.
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@BJ_Greber
Basil Greber
4 years
It's time to properly announce that I have started my own lab at the @ICR_London ! It's certainly a strange time to start a lab, but I have had wonderful support both from the ICR and from @NogalesLab to facilitate the transition. Thank you! New website:
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@BJ_Greber
Basil Greber
1 year
You have no idea how long I waited for this moment. πŸ˜‚ Coming soon! #cryoEM
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@BJ_Greber
Basil Greber
2 months
Our paper on high-resolution 🍩 #cryoEM of the human CDK-activating kinase for structure-based drug design has been published in @NatureComms ! We determined more than a dozen 2 Γ… structures of the ligand-bound complex to investigate the mechanism of inhibitor selectivity.
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@BJ_Greber
Basil Greber
4 years
When it comes to the ongoing political crisis in the US, @sarahkendzior ’s warnings were among the earliest & darkest, but also among the most accurate. The scholar for authoritarian regimes was interviewed by @AnandWrites .
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@BJ_Greber
Basil Greber
1 month
My take on high-resolution #cryoEM of small complexes has just been published in @Structure_CP . In my review, I first introduce how technical developments have enabled #cryoEM structure determination of ever smaller targets at better and better resolutions.
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@BJ_Greber
Basil Greber
3 months
Our first "lab paper" is out: In collaboration with Sandro Ataide/Yichen Zhong (University of Sydney) and @AdrianKoh8 / @AbhayKot (TFS), @JunjieFeng5 determined the structure of the peptide binding domain of SRP68/72, the largest protein components of the eukaryotic SRP.
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@BJ_Greber
Basil Greber
2 years
Our structure of the cyanobacterial phycobilisome is finally out! Amazing stuff by @TinaDomnguez , @paulvictorsauer and colleagues ( @NogalesLab , @HenningKirst , KerfeldLab). High resolution #cryoEM , multiple conformations, inhibited state, it's all in there.
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@BJ_Greber
Basil Greber
3 years
New #cryoEM textbook! Edited by @NogalesLab , @chiulab and the wonderful Bob Glaeser. Contributions by many experts in the field (too many to list them here).
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@BJ_Greber
Basil Greber
3 years
Some good news before the end of the year: An MRC/UKRI Career Development Award will fund my lab @ICR_London for 5 years. Looking forward to more #cryoEM of molecular assemblies involved in DNA repair and exciting collaborations! Thanks to all those who made this possible!
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@BJ_Greber
Basil Greber
3 years
New paper: 2.5 Γ…-resolution structure of the 85 kDa-CDK/cyclin module of the human CAK in complex with ICEC0942, an inhibitor currently undergoing clinical trials for cancer treatment. Data: @NogalesLab , written: @ICR_London , collaboration with @simakali1 .
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@BJ_Greber
Basil Greber
5 years
Our TFIIH paper, previously posted on @biorxivpreprint , has now been published in @eLife : The complete structure of the human TFIIH core complex. Interested in #transcription , #DNArepair , #helicases , or #VPP (phase-plate) #cryoEM ? Have a look!
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@BJ_Greber
Basil Greber
3 years
New lab, who dis? πŸ™ƒ Time to order more stuff.
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@BJ_Greber
Basil Greber
4 years
Our manuscript on the structure of the human CDK-activating kinase has just been made available on @biorxivpreprint . Thanks to @Juanmabertoldi1 , Kif Lim, Tony Iavarone (mass spec), Dan Toso (Berkeley #cryoEM ) and Eva @NogalesLab for their support.
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@BJ_Greber
Basil Greber
5 years
My first @biorxivpreprint is out: The complete structure of the human TFIIH core complex. #NogalesLab #cryoEM #transcription #DNArepair
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@BJ_Greber
Basil Greber
3 years
Open post-doc position in my group at @ICR_London for mechanistic studies of DNA repair, using #cryoEM (of course) and biophysical methods. Long-term aim is to understand structures & mechanisms well enough to target repair pathways using small molecules.
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@BJ_Greber
Basil Greber
1 year
Structure of a pre-60S subunit stuck in the nuclear pore. This is the kind of thing we used to joke about 10 years ago, and we thought it was very (!) funny because ridiculous and completely impossible. Now someone actually did it! Amazing stuff. #cryoEM
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@BJ_Greber
Basil Greber
3 years
Already one year in London. It has not been the smoothest ride (for obvious reasons), but we are about to get off the ground - with a new lab space suitable for my soon-to-be group of four, funding for 5 years, and lots of work to do. Thanks to everyone for their support.
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@BJ_Greber
Basil Greber
2 years
Too hard to resist the #ModelAngelo frenzy. Gave it a go using our small CDK-activating friend. Map computed from 4 hours worth of Glacios 2 data, live processing, 2 hours worth of RELION processing, and then automated modelling without sequence. The quality is quite impressive.
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@BJ_Greber
Basil Greber
5 years
Refreshing the mind in the High Sierras. @NikonUSA #D810 #20mm f/1.8 G. #Yosemite & #MonoLake .
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@BJ_Greber
Basil Greber
3 years
My lab at the @ICR_London is recruiting a postdoc interested in uncovering the mechanisms of DNA repair! Candidates with expertise in the biochemistry of nucleic acid/protein complexes or in #cryoEM are particularly encouraged to apply. Please have a look!
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@BJ_Greber
Basil Greber
3 years
New #CAFR : The @ICR_London . Testing our new #Glacios with a Falcon 4 DED. #cryoEM 🍩
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@BJ_Greber
Basil Greber
3 years
OMG. 🀯
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@BJ_Greber
Basil Greber
4 years
Goodbye California!
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@BJ_Greber
Basil Greber
4 years
What remains after 5 years of Berkeley postdoc: The great grid box graveyard. #cryoEM #cleanup
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@BJ_Greber
Basil Greber
2 years
I guess that's me! If you like #cryoEM of small protein complexes, exploration of interactions between small molecules and protein targets, or 🍩-densities, please join us on the 18th!
@thermosciEMSpec
Microscopy & Spectroscopy
2 years
We're continuing our Glacios 2 Cryo-TEM excitement with a special webinar on Oct. 18 featuring Dr. Basil Greber ( @BJ_Greber ) of @ICR_London . Register to hear how his team used the very first Glacios 2 to facilitate next-gen #cryoEM #DrugDiscovery :
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@BJ_Greber
Basil Greber
1 year
Open postdoctoral position in my lab at the @ICR_London to study DNA repair using #cryoEM ! If you are interested in structural biology and/or biochemistry and molecular biology of DNA repair processes, please have a look (and apply)!
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@BJ_Greber
Basil Greber
6 years
The latest ribosome structure from @The_Ban_Lab : The Trypanosome mitochondrial ribosome, by David Ramrath et al. Never seen anything like it: 400 Angstrom diameter, 127 proteins, the largest almost 2000 aa long. Mind-blowing. Congratulations!
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@BJ_Greber
Basil Greber
2 years
Having manually checked 1300 water molecules (and manually built a few 100s), I can still see COOT's blue density mesh when I close my eyes. Yes, that's a good thing. #cryoEM
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@BJ_Greber
Basil Greber
3 years
Another epic achievement, another 2+ papers squeezed into one: Structures of human mediator and the full human PIC from the Xu lab.
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@BJ_Greber
Basil Greber
3 years
First landscape photography trip in the UK. Cornwall is very nice. πŸ™ƒ #Nikon #landscapephotography #seascape
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@BJ_Greber
Basil Greber
4 years
Right on time for my arrival at the @ICR_London , there's a @NogalesLab paper out, with my brand new e-mail address on it: Our paper on the structure of the CDK-activating kinase has been published online in @PNASNews . Thanks again to everyone involved!
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@BJ_Greber
Basil Greber
4 years
Some departmental love at my last @berkeleyMCB retreat. Thank you to all those who supported me during my stay in Berkeley - and of course special thanks to Eva @NogalesLab !
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@BJ_Greber
Basil Greber
3 months
The use of BLUSH for our recent structure has (unsurprisingly) generated considerable interest. I have appended the "how it started" vs. "how it's going" below.
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@BJ_Greber
Basil Greber
3 months
Our first "lab paper" is out: In collaboration with Sandro Ataide/Yichen Zhong (University of Sydney) and @AdrianKoh8 / @AbhayKot (TFS), @JunjieFeng5 determined the structure of the peptide binding domain of SRP68/72, the largest protein components of the eukaryotic SRP.
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@BJ_Greber
Basil Greber
2 years
New work from our @ICR_London neighbours: The lab of @calfieri84 presents the #cryoEM structure of a nucleosome-bound MuvB transcription factor complex, including an approx. 70 kDa module resolved at 3.5 Γ… using Glacios/F4 data. Congratulations!
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@BJ_Greber
Basil Greber
3 years
Big box with new toys! Getting ready for October, when a PhD student will join my lab. πŸ˜‰
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@BJ_Greber
Basil Greber
3 years
As we go into lockdown once more, looking back on the last 10 years of travel and photography seems to be the best way to appreciate the beauty of our planet and the great outdoors. Stay safe everyone.
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@BJ_Greber
Basil Greber
6 years
Now out in @sciencemagazine : Structure of human TFIID and mechanism of TBP loading onto promoter DNA, by Avi Patel et al. #cryoEM #NogalesLab
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@BJ_Greber
Basil Greber
2 years
Former graduate student extraordinaire (now postdoc) @avibpatel_ with his first last-author paper. Congrats to everyone involved - @StefanZukin , @NogalesLab . #cryoEM
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@BJ_Greber
Basil Greber
4 years
Sunset over the Bay Area. Cycling/walking up the hill is a good isolation workout, and watching the sun go down over the bay brings some peace to these troubled times. #California #SanFrancisco #Berkeley #NikonNoFilter #D810 #Cityscape
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@BJ_Greber
Basil Greber
3 years
Welp. I guess #cryoEM of small complexes was fun while it lasted. #AlphaFold
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@BJ_Greber
Basil Greber
2 years
@strnr @sheilateves Glad you also told us where not to download the tool. Appreciated. πŸ˜‡
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@BJ_Greber
Basil Greber
4 years
After 4 years and 11 months of post-doc in the @NogalesLab , I finally got a desk with a view. Not for long. #BackAtWork
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@BJ_Greber
Basil Greber
4 years
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@BJ_Greber
Basil Greber
7 months
This was missed due to major live events happening around the same time, but we have released some of our high-resolution (2 Γ…) and rapid screening #cryoEM maps & models of the human CAK bound to small molecules. Paper still under review - more to follow.
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@BJ_Greber
Basil Greber
4 years
#Cityscape photography in #London . @NikonUSA Z7 with 20/1.8. That cloudless skies are something I'd have to worry about in the UK is... unexpected.
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@BJ_Greber
Basil Greber
2 years
Structure validation and peer review still an issue in the #cryoEM field. I now routinely ask for maps and models when reviewing and the number of cases that raise concerns is substantial. I often suspect that I was the only reviewer that looked at them.
@Thal_DM
David M Thal
2 years
This is a rather egregious case, and there are many errors in the modelling around the receptor and ligand(s). These errors affect the premise of the paper. How was this not picked up in peer review @NatureComms or prior to. Did any reviewers look at the EM maps or model?
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@BJ_Greber
Basil Greber
1 year
The technically-inclined might wonder how the equipment used affected our ability obtain those 🍩 maps with well-resolved aromatics and ordered waters. We performed two comparisons, using the exact same grid for each pair of data in each experiment.
@BJ_Greber
Basil Greber
1 year
Behold the first pre-print from my lab at the @ICR_London ! Together with the groups of @SimakAli and @AbhayKot , we investigated inhibitor binding and selectivity for the CDK-activating kinase, an important target for future cancer drugs, using high-resolution 🍩 #cryoEM .
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@BJ_Greber
Basil Greber
1 year
Because I encountered an example of a direct interaction in a paper where alphaFold multimer failed to predict any interaction, I was wondering if anyone was doing proteome-wide alphaFold protein-protein interaction screens. Found this - should try:
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@BJ_Greber
Basil Greber
2 years
Behold the amazing phycobilisome, brought to you by @paulvictorsauer ( @NogalesLab ), @TinaDomnguez (Kerfeld Lab) and colleagues! We have two new pre-prints, one about the PBS structure () and one about its regulation by OCP (). #CryoEM
@paulvictorsauer
Paul Sauer
2 years
Our complete 2.7A structure of a cyanobacterial phycobilisome reveals unexpected conformational changes, the position of the quencher and even a completely new protein! Great collaboration with @TinaDomnguez at the Kerfeld lab. Preprints below! #CryoEM @UCBerkeley @LBNLBioSci
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@BJ_Greber
Basil Greber
4 years
Exciting times at @ICR_London ! Our in-house instrument has been delivered and is being built as we tweet! You may not see it but we have big smiles under our masks. 😬
@SGuettlerLab
Sebastian Guettler Lab
4 years
Looks like a new era of Structural Biology and #cryoEM has begun @ICR_London : our new Glacios TEM has arrived in its brand-new home, here presented by new Team Leaders @calfieri84 and @BJ_Greber . The future is bright! Thank you to all who made it happen!
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@BJ_Greber
Basil Greber
3 months
Paper accepted. Yay!
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@BJ_Greber
Basil Greber
2 years
Structural analysis of mutant, GTP-bound tubulin by @bjlafrance and colleagues from the @NogalesLab & @surrey_lab provides new insight into microtubule structure and dynamics. #cryoEM
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@BJ_Greber
Basil Greber
3 years
Nice! Our CAK-inhibitor #cryoEM paper with @NogalesLab and @simakali1 not only graced the cover of @BiophysJ but was also named the editor's pick and featured on the journal's blog:
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@BJ_Greber
Basil Greber
3 years
Weekend fun with CryoSPARC live. CAK (85 kDa) with a bound compound. If we add the other half of the data and move it into RELION, how far will it go? πŸ™ƒ Project with @AbhayKot @AdrianKoh8 @cushing_v @JunjieFeng5 @simakali1 @FuchterMatt . #cryoEM #liftoff
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@BJ_Greber
Basil Greber
3 years
New structural biology conundrum: Do I benefit more from I using my GPU time for improving my #cryoEM map using RELION or by predicting the structure of my target using ALPHAFOLD?
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@BJ_Greber
Basil Greber
4 years
Laboratory woes: Protein: Good job on that purification! I'm doing just fine! Look, I'm swimming in completely clear solution! Me: Ok, let's load you onto gel filtration. With this nice syringe. I'll be gentle. Protein: Syringe? Now I am white as milk! LOL! You fool! Me: 😳😭
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@BJ_Greber
Basil Greber
3 years
Hallo @tagesanzeiger - Sie haben vor kurzer Zeit einen langen Artikel verΓΆffentlicht, in dem basierend auf der Arbeit Klaus StΓΆhrs behauptet wurde, die britische COVID-Variante hΓ€tte keinen Einfluss auf COVID-Fallzahlen. Haben Sie die zu Grunde liegenden Zahlen ΓΌberprΓΌft?
@CorneliusRoemer
Cornelius Roemer
3 years
StΓΆhr wird immer dreister mit seinen LΓΌgen und Desinformationen. Das ist wissenschaftliches Fehlverhalten. Heute behauptet er, der #B117 -Anteil in UK sei am 15. Januar bei 50% gelegen. Das ist sehr falsch. Bereits 1 Monat frΓΌher, ca. 15. Dezember war Anteil 50% (s. 3. Grafik) 1/
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@BJ_Greber
Basil Greber
3 years
Crossing this bridge every day on my way to work, this picture started forming in my mind. Yesterday, I finally got around to bringing a camera & tripod to capture it. #London #CityScape captured with @UKNikon #NikonZ7 .
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@BJ_Greber
Basil Greber
7 years
The cryo-EM structure of human TFIIH. Thanks to my awesome co-authors for their contributions to this project.
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@BJ_Greber
Basil Greber
5 years
@pipcosper Good to know that β€žunfortunate delaysβ€œ have been around for a while...
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@BJ_Greber
Basil Greber
5 years
Our latest paper on #cryoEM of bacterial microcompartments is out @Structure_CP . Fun collaboration with Markus Sutter and the Kerfeld Lab @LBNLBioSci / @michiganstateu .
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@BJ_Greber
Basil Greber
3 years
Application deadline for this postdoc position in my lab is next Sunday (March 21st). If you are interested in DNA repair and have expertise in structural biology and/or biochemistry of nucleic acid-protein complexes, please have a look at the ad⬇️ and our website - and apply. πŸ˜‰
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@BJ_Greber
Basil Greber
3 years
Open post-doc position in my group at @ICR_London for mechanistic studies of DNA repair, using #cryoEM (of course) and biophysical methods. Long-term aim is to understand structures & mechanisms well enough to target repair pathways using small molecules.
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@BJ_Greber
Basil Greber
1 month
Thrilled to hear that @Structure_CP has designated my review on small-complex #cryoEM as a featured article in their April issue. If you have not done so yet, have a look here:
@BJ_Greber
Basil Greber
1 month
My take on high-resolution #cryoEM of small complexes has just been published in @Structure_CP . In my review, I first introduce how technical developments have enabled #cryoEM structure determination of ever smaller targets at better and better resolutions.
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@BJ_Greber
Basil Greber
4 months
Exactly 10 years ago: Our first direct detector adventures @The_Ban_Lab . I do not think we had any idea how wild the next decade in #cryoEM was going to be.
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@BJ_Greber
Basil Greber
7 years
RNA Polymerase + Ribosome = Expressome. Awesome, Rebecca! #cryoEM #ribosome
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@BJ_Greber
Basil Greber
3 years
Another take on the #TowerBridge #London .
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@BJ_Greber
Basil Greber
6 years
Kelly Nguyen's latest breakthrough structure - human telomerase holoenzyme with bound substrate! #cryoEM
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@BJ_Greber
Basil Greber
3 months
It may be worth noting that "standard" RELION 4 gave 2.9 Γ… resolution, cryoSPARC 3DFlex gave 2.7 Γ… (with a larger particle set) and RELION 5/BLUSH gave 3.0 Γ…. But the map quality of the latter was clearly the best, and using that map was the obvious choice.
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@BJ_Greber
Basil Greber
4 years
I have a Talos Arctica joke, but it's kind of low-energy. #cryoEM
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@BJ_Greber
Basil Greber
2 years
FYI - we now have a lab Twitter feed and a pretty picture to show you. #cryoEM
@greberlab
GreberLab
2 years
First lab meeting today, and among the things we discussed was @cushing_v 's recent 1.9 Γ…-resolution reconstruction of an inhibitor-bound CAK complex (true 85 kDa - part of MAT1 is deleted). These stunning data were collected by @AdrianKoh8 and @AbhayKot . Thank you!
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@BJ_Greber
Basil Greber
2 years
First attempts at image stacking for night photography: Milky Way, shot at Crater Lake, Oregon. @NikonUSA Z7 and 14-24/2.8 @ 14/2.8, 7 frames stacked in Photoshop. Amazed by the performance of the lens and the camera.
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@BJ_Greber
Basil Greber
4 years
@hjf_mueller Schweizer hier. Habe in meinem Leben nur einmal persΓΆnlich gewΓ€hlt, als ich vergessen hatte, den Briefumschlag rechtzeitig zur Post zu bringen. Bin weder alt noch krank. Wo ist das Problem?
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@BJ_Greber
Basil Greber
5 months
I don't have a structure to drop but I re-submitted a manuscript. Please clap. πŸ˜†
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@BJ_Greber
Basil Greber
1 year
About half of the papers I review do not show the model-map FSC. If you want to know why I will ALWAYS ask for it, no matter how nice your resolution, read the thread below. #cryoEM
@allostericstate
TJ McCorvie (@allostericstate on ☁️)
1 year
#cryoEM #structuralbiology πŸ”¬πŸ§Š A thread🧡...Due to the egregious structural data discussed a few weeks ago I feel there should be a discussion about how we could possibly improve the process in which EM maps and models are validated before deposition. /1
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@BJ_Greber
Basil Greber
10 months
My journey in the empire of the midnight sun has come to an end. Thank you Norway πŸ‡³πŸ‡΄, this was amazing.
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@BJ_Greber
Basil Greber
1 year
"Postdoctoral students." Give me a break.
@nytimes
The New York Times
1 year
Postdoctoral students and academic researchers at the University of California said they will return to work on Monday after ratifying a new contract. But workers who help teach undergraduates and assign grades remain on strike.
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@BJ_Greber
Basil Greber
3 years
Taking a little break in Cornwall, socially distanced on slippery rocks at the edge of the sea. #landscapephotography #seascape #nikonphotography
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@BJ_Greber
Basil Greber
2 years
@LugerLab @nsmb The people at North Shore Mountain Biking magazine ( @nsmb ) may be disappointed to learn that all that money is not coming their way after all. πŸ˜‰
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@BJ_Greber
Basil Greber
4 years
Amazing work using @DTegunov 's software M: Ribosome at better than 4 Angstroms resolution from in-situ data reveals bound antibiotic. 🀯
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@cryoEM_Papers
cryoEM Papers
4 years
Multi-particle cryo-EM refinement with M visualizes ribosome-antibiotic complex at 3.7 A inside cells
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@BJ_Greber
Basil Greber
7 years
Wow! Structure of a 17 MDa complex at 3.5 Angstroms resolution! So much information...
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@BJ_Greber
Basil Greber
2 years
Sunset afterglow illuminates the sky behind Big Ben. #London
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@BJ_Greber
Basil Greber
1 year
And we conclude the thread with the meme-summary that many of you seemed to enjoy quite a bit. πŸ˜‰
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@BJ_Greber
Basil Greber
4 years
I wish I also had a Titan Krios joke, but I can't afford one.
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@BJ_Greber
Basil Greber
3 years
What an unnecessarily stupid headline with entirely unnecessary & misleading implications.
@nytimes
The New York Times
3 years
China has approved its fifth Covid-19 vaccine, and it’s made from the ovary cells of hamsters.
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@BJ_Greber
Basil Greber
5 months
Goodbye 2023. πŸ‘‹
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@BJ_Greber
Basil Greber
2 years
My photographic 2021. London and the Cornwall coast replaced the Californian wilderness and the Nordic outdoors. For now. Shot using @UKNikon Z7 & a few nice lenses. πŸ˜‰
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@BJ_Greber
Basil Greber
6 months
Some of us keep telling people that #cryoEM is easy and everyone can do it and it does not require much skill, and this is the logical result. Who reviews these papers? πŸ˜΅β€πŸ’«
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@BJ_Greber
Basil Greber
3 years
Ironic that they used for illustration a complex that alpha fold has no chance of predicting correctly.
@Nature
nature
3 years
A 'transformative' AI tool called AlphaFold has predicted the structure of nearly the entire human proteome β€” and there's more to come.
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@BJ_Greber
Basil Greber
1 year
So I bought a 400 mm telephoto and thought I could do some astrophotography with it. Having tried once, I now want an 800 mm telephoto lens. Or a telescope (the below is a 6 MP crop from a 45 MP frame). Why did nobody warn me about the financial risks of getting into astro? πŸ˜†
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@BJ_Greber
Basil Greber
4 years
@hjf_mueller Wer glaubt, dass es ein Problem ist, wenn eine grΓΆssere Anzahl der Stimmberechtigten von ihrem Stimmrecht gebrauch macht, ist selbst Teil des wirklichen Problems: Voter Suppression.
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@BJ_Greber
Basil Greber
4 years
@NoahShachtman Seems relevant: "evening curfews to try to stop young people from gathering socially, [...] contributing to the spread [...] most of the contagion that happens within multigenerational homes comes from young people bringing it in." Someone has to bring it into those homes!
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@BJ_Greber
Basil Greber
5 years
The only sane way to deal with the current madness: Camp out atop a mountain, disconnected from the world (and the cell phone signal). But proteins have to be expressed and grant applications have to be written, so I duly returned to work.
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