bioRxiv @biorxivpreprint Twitter profile

Last Seen Profiles

@3fm927

@krish_itz

@shehip66

@freetips

@DragVisa

@rafalsokol

@AlbaziAssyrian

@SP_DexSin

@CentreAthletics

@DisneySchedules

@TextNow

@DisneySchedules

@nsuzuki_37

@FantasyTipToWin

@thelewdpond

@brian_blum1

@SkullsNeuro

@_holicz_

@WEFUpLink

@coloradopreps

@orangeisborange

@KatieLerno58758

@Liquid_Steel04

@flstnhbr

@meenu

@ClassPointMENA

@automhate

@zangaifamily

@mistressluna636

@ophmaraj

@Braziliscoming

@JeffPassan

@AngelMutabaruka

@DeanOfGirls

@BANGCHAN_INTL

@WeillCornell

bioRxiv

@biorxivpreprint

4 years

SARS-CoV-2 Isolation and Propagation from Turkish COVID-19 patients #bioRxiv

82

405

3K

bioRxiv

@biorxivpreprint

5 years

I have a sibling! Welcome @medrxivpreprint , now live at with 16 papers (and more on the way…)

5

318

664

bioRxiv

@biorxivpreprint

6 months

bioRxiv has launched a pilot to provide AI-generated summaries for all preprints thanks to @Science_Cast . We hope this will increase a preprint’s reach. Feedback welcome below. Full announcement:

4

154

544

bioRxiv

@biorxivpreprint

3 years

mRNA-1273 vaccine induces neutralizing antibodies against spike mutants from global SARS-CoV-2 variants #bioRxiv

5

171

495

bioRxiv

@biorxivpreprint

2 years

AlphaPulldown - a Python package for protein-protein interaction screens using AlphaFold-Multimer #bioRxiv

2

117

474

bioRxiv

@biorxivpreprint

2 years

AlphaFill: enriching the AlphaFold models with ligands and co-factors #bioRxiv

3

154

467

bioRxiv

@biorxivpreprint

3 years

The complete sequence of a human genome #bioRxiv

3

151

397

bioRxiv

@biorxivpreprint

2 years

Drag-and-drop genome insertion without DNA cleavage with CRISPR-directed integrases #bioRxiv

8

92

389

bioRxiv

@biorxivpreprint

3 years

Horizontal Transfer of Histone H3 by Mammalian Cells #bioRxiv

10

121

379

bioRxiv

@biorxivpreprint

3 years

Protein complex prediction with AlphaFold-Multimer #bioRxiv

2

110

371

bioRxiv

@biorxivpreprint

3 years

Large-scale genomic study reveals robust activation of the immune system following advanced Inner Engineering meditation retreat. #bioRxiv

20

215

287

bioRxiv

@biorxivpreprint

3 years

A structural biology community assessment of AlphaFold 2 applications #bioRxiv

0

99

293

bioRxiv

@biorxivpreprint

6 years

RNAlater and flash freezing storage methods nonrandomly influence observed gene expression in RNAseq experiments #bioRxiv

7

225

292

bioRxiv

@biorxivpreprint

3 years

Horizontal and vertical transmission of transgenerational memories via the Cer1 transposon #bioRxiv

6

55

283

bioRxiv

@biorxivpreprint

5 years

The life of P.I. - Transitions to Independence in Academia #bioRxiv

2

152

274

bioRxiv

@biorxivpreprint

3 years

UCSC Cell Browser: Visualize Your Single-Cell Data #bioRxiv

2

77

268

bioRxiv

@biorxivpreprint

5 years

H3K4me3 is neither instructive for, nor informed by, transcription. #bioRxiv

13

127

266

bioRxiv

@biorxivpreprint

3 years

SARS-CoV-2 RNA reverse-transcribed and integrated into the human genome #bioRxiv

19

81

260

bioRxiv

@biorxivpreprint

3 years

Effects of vapor exposure to Δ9-tetrahydrocannabinol (THC) in the Maine Lobster (Homarus americanus) #bioRxiv

10

47

248

bioRxiv

@biorxivpreprint

2 years

Melatonin drugs inhibit SARS-CoV-2 entry into the brain and virus-induced damage of cerebral small vessels #bioRxiv

7

96

255

bioRxiv

@biorxivpreprint

6 years

Identification of Pre-Existing Adaptive Immunity to Cas9 Proteins in Humans #bioRxiv

6

204

249

bioRxiv

@biorxivpreprint

2 months

AlphaFind: Discover structure similarity across the entire known proteome #bioRxiv

AlphaFind: Discover structure similarity across the entire known proteome

AlphaFind is a web-based search engine that provides fast structure-based retrieval in the entire set of AlphaFold DB structures. Unlike other protein processing tools, AlphaFind is focused entirely...

www.biorxiv.org

2

72

249

bioRxiv

@biorxivpreprint

7 months

TSWIFT, a novel method for iterative staining of embedded and mounted human brain sections. #bioRxiv

TSWIFT, a novel method for iterative staining of embedded and mounted human brain sections

Comprehensive characterization of protein networks in mounted brain tissue represents a major challenge in brain and neurodegenerative disease research. In this study, we develop a simple staining...

www.biorxiv.org

5

30

243

bioRxiv

@biorxivpreprint

5 years

Rock the Chalk: A five-year comparative analysis of a large microbiology lecture course reveals improved outcomes of chalk-talk compared to PowerPoint #bioRxiv

13

126

238

bioRxiv

@biorxivpreprint

3 years

Human genome integration of SARS-CoV-2 contradicted by long-read sequencing #bioRxiv

5

61

219

bioRxiv

@biorxivpreprint

2 years

Transcription factors interact with RNA to regulate genes #bioRxiv

2

75

223

bioRxiv

@biorxivpreprint

6 years

The GRE Over the Entire Range of Scores Lacks Predictive Ability for PhD Outcomes in the Biomedical Sciences #bioRxiv

8

159

223

bioRxiv

@biorxivpreprint

4 years

RT-qPCR DETECTION OF SARS-CoV-2 RNA FROM PATIENT NASOPHARYNGEAL SWAB USING QIAGEN RNEASY KITS OR DIRECTLY VIA OMISSION OF AN RNA EXTRACTION STEP #bioRxiv

0

118

207

bioRxiv

@biorxivpreprint

4 years

SARS-CoV-2 Spike protein variant D614G increases infectivity and retains sensitivity to antibodies that target the receptor binding domain #bioRxiv

4

70

200

bioRxiv

@biorxivpreprint

4 years

One enzyme reverse transcription qPCR using Taq DNA polymerase #bioRxiv

5

75

203

bioRxiv

@biorxivpreprint

5 years

The RNA Atlas, a single nucleotide resolution map of the human transcriptome #bioRxiv

2

91

203

bioRxiv

@biorxivpreprint

4 years

Reinfection could not occur in SARS-CoV-2 infected rhesus macaques #bioRxiv

1

91

193

bioRxiv

@biorxivpreprint

5 years

pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive #bioRxiv

1

73

192

bioRxiv

@biorxivpreprint

3 years

Designing a high-resolution, LEGO-based microscope for an educational setting #bioRxiv

2

59

186

bioRxiv

@biorxivpreprint

2 years

Illumina But With Nanopore: Sequencing Illumina libraries at high accuracy on the ONT MinION using R2C2 #bioRxiv

0

62

183

bioRxiv

@biorxivpreprint

2 years

A Draft Human Pangenome Reference #bioRxiv

0

76

179

bioRxiv

@biorxivpreprint

6 months

bioRxiv is almost 10 years old and medRxiv just turned 4! 🎉 Tell us how we’ve done so far & how to keep improving by answering the bioRxiv & medRxiv survey! Deadline: December 10th, 11:59 PM EST Length: 15-20 mins 🔗 Thank you! #biorxiv #medrxiv #preprints

5

86

177

bioRxiv

@biorxivpreprint

3 years

ColabFold - Making protein folding accessible to all #bioRxiv

1

52

173

bioRxiv

@biorxivpreprint

1 year

RNAlysis: analyze your RNA sequencing data without writing a single line of code #bioRxiv

1

33

167

bioRxiv

@biorxivpreprint

6 years

A deep proteome and transcriptome abundance atlas of 29 healthy human tissues #bioRxiv

6

119

168

bioRxiv

@biorxivpreprint

3 years

Novel multicellular prokaryote discovered next to an underground stream #bioRxiv

1

50

160

bioRxiv

@biorxivpreprint

3 years

Single-cell transcriptomics for the 99.9% of species without reference genomes #bioRxiv

Single-cell transcriptomics for the 99.9% of species without reference genomes

Single-cell RNA-seq (scRNA-seq) is a powerful tool for cell type identification but is not readily applicable to organisms without well-annotated reference genomes. Of the approximately 10 million...

www.biorxiv.org

1

58

164

bioRxiv

@biorxivpreprint

3 years

Microbe-seq: high-throughput, single-microbe genomics with strain resolution, applied to a human gut microbiome #bioRxiv

3

60

160

bioRxiv

@biorxivpreprint

3 months

LazyAF, a pipeline for accessible medium-scale in silico prediction of protein-protein interactions #bioRxiv

0

32

162

bioRxiv

@biorxivpreprint

2 years

Autophagy controls mucus secretion from intestinal goblet cells by alleviating ER stress #bioRxiv

9

21

160

bioRxiv

@biorxivpreprint

4 years

A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing #bioRxiv

152

88

159

bioRxiv

@biorxivpreprint

3 years

The Tabula Sapiens: a single cell transcriptomic atlas of multiple organs from individual human donors #bioRxiv

1

54

159

bioRxiv

@biorxivpreprint

5 years

Nanopore native RNA sequencing of a human poly(A) transcriptome #bioRxiv

0

87

159

bioRxiv

@biorxivpreprint

2 years

PlasmidMaker: a Versatile, Automated, and High Throughput End-to-End Platform for Plasmid Construction #bioRxiv

0

32

156

bioRxiv

@biorxivpreprint

1 year

BuTT-Seq: a new method for facile profiling of transcription #bioRxiv

5

19

152

bioRxiv

@biorxivpreprint

5 years

Architectural RNA is required for heterochromatin organization #bioRxiv

1

59

151

bioRxiv

@biorxivpreprint

3 years

Auto-qPCR: A Python based web app for automated and reproducible analysis of qPCR data #bioRxiv

0

28

149

bioRxiv

@biorxivpreprint

7 years

Ten simple rules for structuring papers #bioRxiv

0

124

147

bioRxiv

@biorxivpreprint

3 years

Kalium rhodopsins: Natural light-gated potassium channels #bioRxiv

2

47

149

bioRxiv

@biorxivpreprint

4 months

AlphaFold2 structures template ligand discovery #bioRxiv

0

38

145

bioRxiv

@biorxivpreprint

6 years

Transcriptomic characterization of 20 organs and tissues from mouse at single cell resolution creates a Tabula Muris #bioRxiv

4

90

145

bioRxiv

@biorxivpreprint

3 years

Single-molecule imaging of microRNA-mediated gene silencing in cells #bioRxiv

1

41

141

bioRxiv

@biorxivpreprint

4 years

Preliminary report of preclinical efficacy and safety analysis of gamma-irradiated inactivated SARS-CoV-2 vaccine candidates, SK-01 version 1 and OZG-3861 version 1 #bioRxiv

2

28

141

bioRxiv

@biorxivpreprint

5 years

The effect of bioRxiv preprints on citations and altmetrics #bioRxiv

4

89

142

bioRxiv

@biorxivpreprint

5 years

DeepImageJ: A user-friendly plugin to run deep learning models in ImageJ #bioRxiv

2

50

141

bioRxiv

@biorxivpreprint

4 months

A universal molecular mechanism driving aging #bioRxiv

A universal molecular mechanism driving aging

How cell replication ultimately results in aging and the Hayflick limit are not fully understood. Here we show that clock-like accumulation of DNA G-quadruplexes (G4s) throughout cell replication...

www.biorxiv.org

1

40

141

bioRxiv

@biorxivpreprint

6 years

A comprehensive toolkit to enable MinION long-read sequencing in any laboratory #bioRxiv

0

88

139

bioRxiv

@biorxivpreprint

4 years

Engineered ACE2 receptor traps potently neutralize SARS-CoV-2 #bioRxiv

3

37

133

bioRxiv

@biorxivpreprint

4 years

Supervising the PhD: identifying common mismatches in expectations between candidate and supervisor to improve research training outcomes #bioRxiv

0

51

137

bioRxiv

@biorxivpreprint

3 years

Interpreting Neural Networks for Biological Sequences by Learning Stochastic Masks #bioRxiv

1

34

134

bioRxiv

@biorxivpreprint

5 years

Tracking the popularity and outcomes of all bioRxiv preprints #bioRxiv

1

76

136

bioRxiv

@biorxivpreprint

3 years

Spike mutation T403R allows bat coronavirus RaTG13 to use human ACE2 #bioRxiv

7

58

132

bioRxiv

@biorxivpreprint

3 years

Can AlphaFold2 predict protein-peptide complex structures accurately? #bioRxiv

1

44

136

bioRxiv

@biorxivpreprint

3 years

AlphaDesign: A de novo protein design framework based on AlphaFold #bioRxiv

0

43

134

bioRxiv

@biorxivpreprint

1 year

PyDESeq2: a python package for bulk RNA-seq differential expression analysis #bioRxiv

1

19

135

bioRxiv

@biorxivpreprint

5 years

Flowers respond to pollinator sound within minutes by increasing nectar sugar concentration. #bioRxiv

1

67

133

bioRxiv

@biorxivpreprint

3 years

NERD-seq: A novel approach of Nanopore direct RNA sequencing that expands representation of non-coding RNAs #bioRxiv

1

37

132

bioRxiv

@biorxivpreprint

3 years

CRISPR-Cas9 bends and twists DNA to read its sequence #bioRxiv

0

33

131

bioRxiv

@biorxivpreprint

4 years

A human monoclonal 1 antibody blocking SARS-CoV-2 infection #bioRxiv

0

69

130

bioRxiv

@biorxivpreprint

3 years

An engineered multifunctional protein tag for advanced fluorescence imaging #bioRxiv

2

34

130

bioRxiv

@biorxivpreprint

2 years

SARS-CoV-2 vaccination induces immunological memory able to cross-recognize variants from Alpha to Omicron #bioRxiv

2

32

129

bioRxiv

@biorxivpreprint

3 years

SARS-CoV-2 causes brain inflammation and induces Lewy body formation in macaques #bioRxiv

5

56

128

bioRxiv

@biorxivpreprint

3 years

A cell atlas of chromatin accessibility across 25 adult human tissues #bioRxiv

0

34

126

bioRxiv

@biorxivpreprint

2 years

mCherry contains a fluorescent protein isoform that interferes with its reporter function #bioRxiv

1

47

127

bioRxiv

@biorxivpreprint

6 months

Analysis of NIH K99/R00 Awards and the Career Progression of Awardees #bioRxiv

2

49

128

bioRxiv

@biorxivpreprint

1 month

Structural basis for recognition of the FLAG-1 tag by anti-FLAG M2 #bioRxiv

Structural basis for recognition of the FLAG-tag by anti-FLAG M2

The FLAG-tag/anti-FLAG system is a widely used biochemical tool for protein detection and purification. Anti-FLAG M2 is the most popular antibody against the FLAG-tag, due to its ease of use,...

www.biorxiv.org

0

42

123

bioRxiv

@biorxivpreprint

2 years

When less is more - Endogenous tagging with TurboID increases the sensitivity of proximity labelling-based experiments #bioRxiv

0

23

126

bioRxiv

@biorxivpreprint

3 years

A Highly Potent SARS-CoV-2 Blocking Lectin Protein #bioRxiv

0

21

124

bioRxiv

@biorxivpreprint

4 years

Structural Basis for the Inhibition of the RNA-Dependent RNA Polymerase from SARS-CoV-2 by Remdesivir #bioRxiv

0

58

122

bioRxiv

@biorxivpreprint

2 years

AlphaFold2 and RoseTTAFold Predict Posttranslational modifications. Chromophore Formation in GFP-like Proteins. #bioRxiv

1

27

125

bioRxiv

@biorxivpreprint

3 years

AlphaFold2 transmembrane protein structure prediction shines #bioRxiv

0

27

119

bioRxiv

@biorxivpreprint

2 years

AlphaFold2 can predict structural and phenotypic effects of single mutations #bioRxiv

1

26

121

bioRxiv

@biorxivpreprint

3 years

Robust de novo design of protein binding proteins from target structural information alone #bioRxiv

0

36

120

bioRxiv

@biorxivpreprint

5 years

PyVOL: a PyMOL plugin for visualization, comparison, and volume calculation of drug-binding sites #bioRxiv

1

56

116

bioRxiv

@biorxivpreprint

4 years

An orally bioavailable broad-spectrum antiviral inhibits SARS-CoV-2 and multiple endemic, epidemic and bat coronavirus #bioRxiv

1

65

120

bioRxiv

@biorxivpreprint

4 years

Automated continuous evolution of proteins in vivo #bioRxiv

0

40

120

bioRxiv

@biorxivpreprint

3 years

iCodon: ideal codon design for customized gene expression #bioRxiv

2

33

115

bioRxiv

@biorxivpreprint

3 years

OpenCell: proteome-scale endogenous tagging enables the cartography of human cellular organization #bioRxiv

0

43

118

bioRxiv

@biorxivpreprint

7 years

Bioconda: A sustainable and comprehensive software distribution for the life sciences #bioRxiv

0

85

115

bioRxiv

@biorxivpreprint

3 years

Using AlphaFold to predict the impact of single mutations on protein stability and function #bioRxiv

0

24

112

bioRxiv

@biorxivpreprint

4 years

Direct measurements of mRNA translation kinetics in living cells #bioRxiv

1

45

111

bioRxiv

@biorxivpreprint

2 years

Proteome-wide identification of amino acid substitutions deleterious for protein function #bioRxiv

0

23

109

bioRxiv

@biorxivpreprint

4 years

Complete genome characterisation of a novel coronavirus associated with severe human respiratory disease in Wuhan, China #bioRxiv

2

51

106

bioRxiv

@biorxivpreprint

6 years

Firefly genomes illuminate the origin and evolution of bioluminescence #bioRxiv

0

70

109

bioRxiv

@biorxivpreprint

2 years

BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection #bioRxiv

3

39

109