Research associate connecting anthropology and ancient DNA at
@harvardmed
&
@HarvardHEB
. Avid runner, yoga-doer, beer aficionado, mediocre vegetarian.
🚨New paper alert! We report
#ancientDNA
data from 39 people who lived on island of
#Soqotra
650-1750CE and provide new evidence that there was not complete population replacement between the Pleistocene and Holocene throughout the Arabian Peninsula (1/n).
I'm grateful to have had the chance to explore more of
#TamilNadu
#India
with the
#ancientDNA
team from MKU (and our archaeologist partners).
#Adichanallur
is simply awe-inspiring. Now, on to the DNA work to provide some additional perspective on these ancient people! 💀🧬🇮🇳
Today we share the FIRST genome-wide
#AncientDNA
data from
#Nubia
! We sequenced 66 individuals from 2 Christian Period cemeteries at Kulubnarti, increasing the number of ancient individuals with genome-level data from the Nile Valley from 3 to 69!!! .(1/11)
#ancientDNA
data from >200 ancient African individuals (!!!) are now published. This research has already become an integral part of our understanding of African population history and will continue to shape our understanding of the African past. (1/4)
MEROË!!! An adventure that was nothing short of a dream come true.
If you ever get the chance to visit
#Sudan
, please go. The beauty of nature and culture past and present is only compounded by the people, who have hearts of pure gold. 🇸🇩
Our study of genome-wide data from 184 individuals predating European contact from The Bahamas, Cuba, Hispaniola, Puerto Rico, Curaçao, and northwestern Venezuela is out on bioRxiv! (1/n)
Another step for
#opendata
in
#ancientDNA
research: a pre-publication release of shotgun sequencing data w/ an avg of ~5x coverage from 216 ancient individuals (50 sequenced to high cov) generated through international collaborative effort! Get access @
🚨🧬New paper tracing genetic changes across the rise/fall of the Roman Empire, showing the genetic impact of people w/Anatolian-, Cent/North European- & Steppe-, and Slavic-related ancestry. This is a seriously beautiful synthesis of arch + genetic data.
👋🏻 Meet the 3rd, 4th, and 5th people in Africa who are now fully trained in minimally invasive sampling for
#ancientDNA
! It’s a privilege to exchange knowledge, share meals, tell stories, and plan for scientifically and socially impactful work with this Sudanese dream team 💀🧬🇸🇩
The
#Madurai
#ancientDNA
dream team. We’ve had a strong week of work in their awesome ✨new clean room✨ and topped it off with a visit to
#Konthagai
(burial site of Keeladi) and lots of amazing Tamil food! 💀 🧬
An extremely exciting new
#ancientDNA
#preprint
for your evening social distancing, led by
@WangChuanchao
! It's a mammoth study of 191 ancient individuals spanning time (7,000 years) & space (Mongolia, China, Taiwan, Japan).
Newsflash!
#Ossicles
are tiny,
#optimal
repositories for
#ancientDNA
! While being as rich in DNA as the cochlea (part of the petrous bone), they can also be sampled in a way that minimizes impact to skeletal collections-
#win
! (1/n)
I’m jazzed to finally be working w/my amazing team on our
@NatGeo
project to increase the accessibility of
#ancientDNA
research in West Africa. We’re exchanging knowledge, sharing skills, improving the state of the collections, & preparing to gather an immense amount of new data.
I am fully speechless about the
@NatureComms
paper on female mentorship. I have gained more - professionally as well as personally - from my female mentors and mentees than I could ever count for. They've supported me, empowered me, believed in me and pushed me to my limits (1/n)
“Social stratification without genetic differentiation at the site of Kulubnarti in Christian Period Nubia” is out in
@NatureComms
, increasing the number of number of ancient individuals with genome-level data from the Nile Valley FROM 3 TO 69!!!💀🧬 (1/15)
A MEGA effort by 44 authors from 19 countries provides new insight into Pleistocene Africa using
#aDNA
! To sum it up: 6 foragers as old as 18ka are modeled as a mix of 3 divergent source pops, revealing extensive movement in the LSA followed by increased regionalization ~20ka.
New
#OpenAccess
paper out today in
@Nature
! We present new
#AncientDNA
data on ancient African foragers (people who hunted, gathered, & fished), including what are now the oldest
#aDNA
sequences from sub-Saharan Africa! 1/21 🧵
🚨I've seen a lot of chatter about accessing
#ancientDNA
papers (esp. the Lazaridis et al. 2022 trio).
*ALL* papers that come out of our lab are freely available at
(and the genotype data are available at )
💀🧬
A wonderful and thoughtful 🧵on an action that is currently horrifying the entire scientific community (rarely are we all so united in our perspective).
"It's not enough to just explore" is poignant. The line between exploring and exploiting is thin, and has been crossed again.
#Naledi
&
#Sediba
hominins in space... a short pondering🧵
Strong negative reaction from colleagues, so what are actual risks?
- loss of fossils from flight failure
- damage from radiation
- perceived impact on professionalism of discipline
Most modern Arabians can be modeled as deriving all of their Levantine/Anatolian-related ancestry from a Neolithic farmer-related source; however, the medieval Soqotri had relatively more ancestry from ancient groups closer to Natufian hunter-gatherers (2/n).
The medieval Soqotri gene pool is best modeled as deriving ~86% ancestry from people from the Hadramawt, with the remaining ancestry well-proxied by an Iranian related source with up to 2% ancestry from the Indian sub-continent. (4/n)
Excellent multidisciplinary study of a seven-generation family from a non-elite burial context - the ability to reconstruct such extensive pedigrees gives us incredible new insights into the lives of prehistoric people💀🧬
News & Views summary here!
🚨New
#ancientDNA
data from
#Africa
🚨 and the first from the medieval
#Swahili
coast! Among the most amazing results are different participation from males/females in pop. mixtures (e.g. male Near Eastern & Persian ancestry mixing with female African ancestry).
And so it begins
#DNAirobi
🧬💀🇰🇪
Karibuni Kenya to my colleagues who are here from Tanzania, Uganda, Senegal, South Africa, Ethiopia, UK, Spain, China, Australia, USA, Canada. We greatly miss those from Sudan🇸🇩
ASANTE SANA to the
@museumsofkenya
enough for hosting us!
After long pandemic delays, I'm so thrilled to be in Warsaw to start working with
@PCMA_UW
on our
@NatGeo
project that is sure to provide some amazing new insight into Medieval
#Nubia
using
#aDNA
💀🧬. I'm equally as thrilled to eat pierogi on a daily basis!
While supra-regional papers have their own powerful place in ancient DNA research, it's really exciting to see the equally powerful micro-regional approach adopted by
@AlMittnik
et al. to explore mechanisms behind social inequality in ancient Germany:
AMAZING day in
#ancientDNA
! Data from 793 INDIVIDUALS (!!) shows prev-unknown migration into Britain (likely from France) during LBA resulted in increased EEF ancestry in southern (not northern) Britain & created vector for spread of early Celtic languages
.
@johnhawks
and
@Anthrofuentes
- you quite often speak about the ethical treatment of human remains - I'd love to hear your perspective on how and why this happened.
🚨Update🚨 A PDF of our encyclopedia article reviewing the >200 published ancient genomes from
#Africa
is available to download on the Reich Lab website (as is every paper our group publishes!!) : 💀🧬🌍
A huge thank you to Nada Salem for translating our abstract into Arabic, which helped us share results with people on Soqotra (more of this to come!) (11/n)
Our new paper that details a standardized and replicable sandblasting technique for obtaining bone powder from the cochlear part of the
#petrous
pyramid for
#ancientDNA
analysis is here!
@daniMfernandes
To this group of people who traveled to Nairobi for
#DNAirobi
, I am grateful for you and inspired by you.. We took a huge step toward building a future of ethical, engaged, and equitable scholarship and I could not be more proud.
Onwards! 🧬💀🇰🇪 🌍
Study the human past, but do it with a view 😎! I’m so excited to continue our work on the pre-contact Caribbean and gain even more new insight on the first people who called this part of the world home 💀🧬
A well-written summary of the “WTF” that so many of us who respectfully work with and thoughtfully study human remains are feeling. This type of publicity stunt should be condemned by all of us in the scientific community.
very short🧵 1/
The ethical debate over the treatment of the remains of our ancestors is immensely complex and has genuinely been one of the greatest positive forces for good change in the disciplines of archaeology and paleoanthropology
We observe this same pattern in only one other group - present-day people from the Hadramawt region of present-day Yemen - which represents a likely source for the peopling of Soqotra. Genetic connections between these regions are extremely strong.(3/n)
I'm getting excited for our session
#AncientDNAinServiceofArchaeology
to be held at
#SAA2019
. Looking forward to seeing many of our colleagues from both archaeology and genetics on Friday (4/12) from 1-5pm in 110 Galisteo (session 253)
@JakobSedig
How can you not be enthralled by a paper that talks about "god-kings" in its abstract? I continued to be totally amazed at the ways that ancient DNA brings the past to life in new and increasingly high-resolution ways.
We didn't expect this in our Irish Neolithic genomes, the son of a union between first degree relatives interred in the ceremonial heart of UNESCO site, Newgrange passage tomb
@_larsporsena
@tcdgenmicro
@tcddublin
\
I mean...🤯. Another must-read paper that shapes the way we think about Neandertal/modern human interactions and the biological connections between modern humans that span tens of thousands of years. Congrats
@MatejaHajdi
on a phenomenal paper!
In our new paper, out today in
@nature
, we recovered genome-wide data from the oldest Upper Palaeolithic modern humans in Europe, who lived between 46,000 and 43,000 years ago in Bacho Kiro Cave, Bulgaria:
Came across this picture in an article about ancient DNA in the pop press. From what I can tell, this researcher is "doing ancient DNA" by inexplicably clasping the zygomatic with tweezers next to some empty test tubes. HAVE I BEEN SCIENCING WRONG THIS WHOLE TIME!?
MY BEST GAL
@palaeobeth
SLAYING IT ON THE NEWS:
Taking it as my personal duty to spread this clip beyond Edmonton morning news because this lady is as accomplished and eloquent as it gets! 💀🧬🌍
Human history in Africa is incredibly complex, and new
#ancientDNA
research is illuminating the deep African lineages that split and diversified early in our history-- including by identifying a previously unknown pop that contributed little DNA to present-day Africans.
Following Svante's Nobel Prize, Nature Review Methods Primers has decided to make our review on 'Ancient DNA Analysis' free for download for the upcoming month. Thanks
@MethodsPrimers
! Please RT! 1/2
Genotypes for 184 individuals from the pre-contact Caribbean are now available @ ! This extraordinary dataset multiplies by 60x the amount of data from the Caribbean islands and includes the first Caribbean Archaic Age data!
As someone who often found trouble as a kid, I can definitely tell you that this is the kind of post-mistake "reflection" that would have gotten me sent back to my room to think about it for a bit longer...
An important question: where is
@NatGeo
in all of this?
- Statement on fossils sent to space -
I hear the concerns raised by the scientific community, which highlight the need for renewed engagement around the processes and permissions to use fossils and heritage artifacts for the public engagement in science. I strongly value the
I will *never* get tired of finding the stapes and excited about how much we can learn from such a small bone while also minimizing damage to collections of ancient individuals. (5 rubles for comparison!)
#AncientDNA
I'm so excited to return to Sudan next week to co-lead the
#BioarchaeologyAndBiomolecules
practical workshop at NCAM!
All of our Sudanese colleagues & students of archaeology are very welcome to attend.(1/2)
DATES is a super powerful method for providing accurate estimates of the timing of admixture and works w/limited samples and large amounts of missing data making it ideal for
#ancientDNA
- happy to see this pre-print up!
Our paper “Reconstructing the spatiotemporal patterns of admixture during the European Holocene using a novel genomic dating method” led by
@M_Chintalapati
and Nick Patterson is on biorxiv!
@balajivenk10
data generation will take some months, and then careful analysis of the data after that can also take awhile. But -- we strongly believe in open data so we will make them available as soon as we can.
Teleost bone=brittle & porous, great at preserving DNA. Is a lack of bone remodeling (as in the human osseous inner ear) the key? Also cool that diff fish bones yield similar levels of aDNA- so different to humans! Shows us how much species-specific research remains to be done.
It's that time again!
@JakobSedig
and I will be organizing another session at
#SAA2020
about
#ancientDNA
and
#archaeology
! We are looking for a few more speakers who are interested in the topic of increasing the accessibility of ancient DNA within archaeology- abstract attached!
Could this tremendous effort to pinpoint the ancestral and geographical origins of the Yamnaya be
@iosif_lazaridis
(et al.'s) magnum opus?
Of note is the remarkable collaboration that made this science possible -- more powerful in these fraught times than ever before.
Our decade-long search for the genetic traces of the earliest Indo-Europeans has culminated in the two preprints we are releasing today!
With Nick Patterson, David Anthony, and 91 co-authors, on "The Genetic Origin of the Indo-Europeans"
"Our results provide the first rigorous basis for understanding how Neanderthal introgression modulates complex trait variation in present-day humans."💀🧬👏
Discussions about the accessibility of ancient DNA in archaeology are now more important than ever, so let's have this conversation at the
@SAAorg
meeting in 2021--
@JakobSedig
and I invite anyone interested in joining this conversation to submit an abstract for our session!
Research is most impactful when made accessible to broad audiences from varying educational backgrounds and of all ages. Check out the kids' version of our
#Caribbean
#ancientDNA
paper w/ corresponding lesson plan!
@SJforKids
Our understanding of the ancient
#populationhistory
of
#EastAsia
has grown substantially over the last 24 hours with new genetic data from >400 ancient individuals! See today's
#ancientDNA
#preprint
on population dynamics on the Eastern Steppe:
Is anyone else unable to fully relax at a conference until their own talk is over?
#ISBA9
Future Fellows talk on
#Nubia
#ancientDNA
in the books-- now it's time to re-watch all the amazing presentations by my colleagues & friends and prepare for the last day!
I'm excited to see the first paper stemming from discussions @
#DNAirobi
! It reminds us about the skeletal biology research that forms the foundation for much of our genomic work today, but may not be on the radar of most geneticists🇰🇪🧬💀
I'm so excited about the genetic data that will be generated after this trip 💀🧬🇷🇺! We worked w/local archs+anthros who are invested in learning about the past in this part of the world, and I am in awe of the new landscapes, cultures, & cuisines I experienced. Now, onwards! ✈️
BREAKING NEWS:
The 2022
#NobelPrize
in Physiology or Medicine has been awarded to Svante Pääbo “for his discoveries concerning the genomes of extinct hominins and human evolution.”
To learn more about Soqotra and the efforts being made to document it’s incredible cultural heritage, check out
@SoqotraHeritage
! Here’s to opening the door to Arabian ancient DNA alongside incredible colleagues!💀🧬🇾🇪(12/12)
A reminder!
#aDNA
research cross-cuts disciplines, stakeholders & communities, & we need many voices to move this field forward.
@palaeobeth
@JakobSedig
& I are organizing a forum for this dialogue & want you to participate! Deadline is 10/15; let us know if you want to join!
**IMPORTANT note to the
#ancientDNA
community!
Don't ignore this if you use qpfstats w/ allsnps: YES, inbreed: NO, and individuals have pseudo-haploid data (typical for ancient DNA) - use this new version even if you just use qpfstats as a precursor for qpWave/Adm!
#bugshappen
Nick Patterson asked me to advertise that
there is a new version of ADMIXTOOLS on github.
This fixes a serious bug in which qpfstats produced
erroneous answers if: (cont'd)
Despite being located off the Horn of Africa, medieval Soqotri have extremely little sub-Saharan African-related ancestry: models of genome-wide data can be fit without this ancestry, while we find evidence of only one L3 mtDNA haplogroup. (7/n)
In our latest paper (w/
@daniMfernandes
), we take an
#interdisciplinary
approach to explore 3 disarticulated/commingled skeletons that exhibit similarities in biological terms BUT exhibit 2 different types of ACD and diverse biogeographic ancestries:
I am beyond excited to be on another amazing adventure on the quest for
#ancientDNA
💀🧬🇷🇺. Got questions about human history? We're (part of the (spectacular) team) on it.
Another exciting method for minimizing damage to skeletal material during the extraction of
#ancientDNA
is now officially published! I'm thrilled to have the opportunity to work with such conscientious people on development of less destructive methods for our research.
I'm excited to announce that our manuscript describing a minimally destructive approach for sampling aDNA from ancient teeth is now published in
@GenomeResearch
, complete with new, more detailed pictures of teeth processed using this approach. 1/4
#paleoproteomics
is not only a thing...it might just be the coolest thing. This stuff is seriously pushing the boundaries of the deep-time phylogenetics. Even just writing "deep-time phylogenetics" feels cool.
Have kids? Here's a great way to teach archaeology AND genetics (all while learning about our Caribbean
#ancientDNA
research). Article and lesson coming in Spanish soon, stay tuned!!
#BioarchaeologyAndBiomolecules
💀 🧬 workshop day 1 - a quick intro lecture before we get started with our practical work documenting and analyzing Meroitic Period remains. It’s a joy to work with this group and be learning as much as I am teaching!
My favorite part of this work was using ancient DNA to help confirm what many Caribbean people know from their oral traditions/family histories: people living in parts of the Caribbean have Indigenous ancestry that can be directly traced back to pre-contact times.(10/n)
My first
@InsideNatGeo
project during my PhD was to study ancient DNA from the pre-contact peoples of the Sabana de Bogotá; 2 years later, this project has grown in ways I never anticipated...but my love affair with this city continues
#Bogot
á
#ancientDNA
#staytuned
#DNAirobiStaysHome
is only half over, and I've never been more inspired! We have so much work to do toward transparent communication, capacity building, meaningful engagement in
#Africa
- and it's so wonderful to hear from such a diverse range of stakeholder voices.
A longstanding question in Soqotri archaeology asks if burial tafoni were segregated by sex? We show that 7/13 tafoni included individuals of both sexes & provide evidence of matrilineal & patrilineal relationships among people buried together. (9/n)
I'm moving continents with
@InsideNatGeo
to find out what we can learn about the origins, affinities, and interactions of the early peoples of the
#Sahel
using
#ancientDNA
! Stay tuned for updates!
With ROH, we see a reduced rate of cousin marriages in medieval relative to present-day Soqotra. More research will show if there was a relatively recent shift in marriage practices btwn medieval times and today on Soqotra and perhaps in other parts of the Arab world. (8/n)
Casual million-year-old
#mammoth
genome to get you through your Wednesday:
#AncientDNA
, once again, shatters a record and blows my mind.
Side note: I'd like to endorse "crap DNA" as an official scientific term.
@palaeobeth
,
@prendydigs
, and I summarized the current state of
#aDNA
research in Africa and how it can grow and evolve in ethical and equitable ways:
BYE old cardboard trays/boxes, hellooo collection reorg! 🙌🏼 spending time/resources to improve the state of collections is so important. Even better? My colleagues are now (AFAIK) the first people living in Africa to be trained in less destructive sampling techniques for
#aDNA
!🧬
First, we find that all Kulubnarti Nubians were admixed between Nilotic-related ancestry & ancestry reflecting a West Eurasian-related gene pool likely introduced into Nubia via Egypt, but ultimately deriving from an ancestry pool like that found in the BA/IA Levant.(5/11)
Our work reporting 523 new samples, the largest ancient DNA study to date, and the most widely accessed genomics preprint on bioRxiv, detailing the parallel genomic history of Europe and South Asia over the past 10000 years, is now out in
@sciencemagazine
.
As we move toward a unified archaeogenetic science, we need opportunities for engaged dialogue. The best part of my job is finding forums to have these discussions!
@palaeobeth
@JakobSedig
and I are proposing a ROUNDTABLE for
#WAC2020
- let us know if you want to join the convo!