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Dr. Elinne Becket - @bielleogy on all platforms Profile
Dr. Elinne Becket - @bielleogy on all platforms

@bielleogy

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Assoc Prof @CSUSM | 🦠⇄🦠 MGEs & coastal metagenomes | #BlueSoup 🥣🧬 🧫 | R1→Biotech→PUI | Protective mama bear of students | She/Her

San Marcos, CA
Joined September 2016
Don't wanna be here? Send us removal request.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
All important #BlueSoup updates, from me or Sebastian, will be added in line with the original thread here (it's run a little long so you need to click "show replies" at the bottom):
@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
Ok I'm outing myself here but there was forgotten beef soup in our fridge we just cleaned it out and it was BLUE?!?!? Wtf contam would make it blue??? Like BRIGHT blue!! 🤢🤮 Even w/ all my years in micro I'm not handling this well.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
Hey y'all I have this really weird mole on my hand, think I should get it removed?
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 month
My friend is a PhD student whose dog is trained to alert emotional distress. She did not realize that bringing the dog to work would result in the dog alerting the whole damn lab all day.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 years
DO. NOT. BE. A. JERK. TO. POSTER. PRESENTERS. Especially students. What is wrong with people omg.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
I had to fire my grad student tonight, for being in lab so late. She's re-hired tomorrow, but tonight she needs to clear out and go get dinner.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
4 years
For those feeling impostor syndrome, I am a microbial genomics professor and I've never taken a microbiology or genomics class. Not every path has to be conventional.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
Our friend made the assertion that In-n-Out is overrated. So as scientists on a stormy day, we needed to test this properly (with options w/in our neighborhood). Let me say up front we regretted this almost as soon as we started. 1/
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
Can we pretty please do away with the whole making students pay for travel ahead of time and get reimbursed later? This is a massive source of inequity that is a low hanging fruit to fix.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
Ok I'm outing myself here but there was forgotten beef soup in our fridge we just cleaned it out and it was BLUE?!?!? Wtf contam would make it blue??? Like BRIGHT blue!! 🤢🤮 Even w/ all my years in micro I'm not handling this well.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 years
Do any academics actually know how to unwind and celebrate after hitting a milestone or is everyone like my messed up brain and immediately onto the next thing? 😩
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
10 months
My colleague is asking for examples of scientific papers that have pop culture references in the title. Twitter, do your thing.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
What is it about coffee shops/breweries/etc that make it easier for some people (like me) to focus on work more deeply/for longer periods?
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
I didn't think that 22 hours later I'd still be explaining to people I didn't actually fire my grad student 🙈🙈🙈
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
11 months
I can't believe this is real... PROMOTED WITH TENURE! 😭😭🙌
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
I am my own sun.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
4 years
This paper has totally changed my pedagogical mindset. I always thought of it this way but I didn't show my students as well as I could. In the end, we're training them to become our peers, not seeing if they're already there.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
But I absolutely fire students who like pineapple on pizza. Zero tolerance.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
10 months
For anyone feeling impostor syndrome... This was during my postdoc, after 6 years experience in molecular biology.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
I always had the purple lab gloves then my lab saw another lab had the black gloves and were like "Becket why can't we have the cool gloves????" so I got the black gloves and now I can't write my PCR reaction recipe on my hand so we're going back to the purple gloves.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 years
I think we should rename "research" to "troubleshooting occasionally sprinkled with serendipity."
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
While we're on the topic of normalizing failure in science, I spent the entire third year of my PhD (& multiple grant submissions) on a project that turned out to be all an artifact, & literally had to just throw away an entire year of work. Things turned out ok. Science is hard.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 month
@liv4bacteria It's like walking into a room full of Drakkar Noir and Axe Body Spray
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
I officially have no choice but to only order black gloves and metallic sharpies from now on.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
I always had the purple lab gloves then my lab saw another lab had the black gloves and were like "Becket why can't we have the cool gloves????" so I got the black gloves and now I can't write my PCR reaction recipe on my hand so we're going back to the purple gloves.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
Just thinking how absolutely ridiculous the Materials & Methods and Acknowledgements sections are going to be if #BlueSoup becomes a paper 🤣
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
I can't believe this needs to be said: of course she's not fired. The point is that stepping back, resting, and planning leads to more success than forcing a protocol quickly, and I care about her. Ruin the joke!
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
🥳😭❤️😭 5 for 5 of our lab applying for PhDs got interviews!!!! So proud of and happy for them omggggg
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 years
I'm teaching a microbial ecology class where ugrads collected, isolated DNA, and prepared 16S libs on 96 soil samples, and not only did they all work, the sequencing provider said they were "practically perfect libraries". Never underestimate what students can do.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
My grad student is smarter than me. Dancing between proud and terrified 🤣
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 years
I caught my dog chewing on electrical cords, so I had to ground her. She’s doing a better job of conducting herself currently. Sorry, I couldn't resist.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
We have a new addition to the lab! 😍😍😍 Three years of scrounging together funds but it's finally here!!! (Hug was completely unstaged 🤣)
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 months
I just spit all over my phone 💀
@willovvens
Will Ovvens
2 months
heard UMAP was popular on twitter, anyone have any advice on how to tighten up the clusters?
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 years
Thinking of my women students when reading that misogynistic tweet, and the message it sends about how silently pervasive this attitude is, and how it undermines us at every step.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 years
It's really annoying when I tell people that many faculty are on a 9-month contract, and they go "oh but it's paid over 12 months so you're paid over summer," missing the point that those summer months are still not compensated.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
10 months
Of course it's of a stupid joke 😆
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@BiggestttHater
Jon
10 months
what is y’all most liked tweet?
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
9 months
I'm still mad about a thing. As a 1st year undergrad supporting myself, I started working for a PhD student that told me I'd get paid after a trial period. 8 weeks later of FT summer work, he tells me it's a volunteer position and there will be no pay, so I told him... 1/3
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 years
I'm here to report that we've reached the generation where students have never used a flash drive. #feelingold
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Dr. Elinne Becket - @bielleogy on all platforms
3 years
I'm crying 😭 this is everything I needed right now
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
A freshly graduated female student just had a job interview at a major biotech company, & the interviewers were a panel of all men who asked only personal questions (no scientific q's), & one was pushy and rude & kept cutting off the interviewee mid-sentence. Mama bear big mad.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
Trying to manage a panic attack while a lab full of people are depending on you is not an easy time 😖😭
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
TFW you get a Sunday night email from your uni's pre-award staff and the email notification only shows "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!" The Becket Lab is officially funded y'all!!! I can pay my ugrads and ramp up my research!! 😭😭😭 I'm without words.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 years
I'm so proud to see my students set boundaries 🤣
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
I'm still paranoid whenever I have to type "hard disk space" after that very regretful conference poster abstract typo in 2019...
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
Trying to motivate my student (who just submitted PhD apps) to push through the last 2 weeks of her undergrad, so I agreed to suffer through the Twilight movie of her choice in exchange for 2 weeks of her game face. The sacrifices I make...
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
Of course I should have known my audience and known a group of microbiologists wouldn't let it slide without photographic evidence.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
My mom (who made the soup for my birthday) came across this thread and now 1) I have to answer for letting her soup spoil and 2) she's worried @ATinyGreenCell will figure out her secret recipe
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 years
What are people's thoughts about including a Biorender-esque visual methods workflow as a figure in research pubs? I think it would be helpful for people to understand the methods quickly, but I haven't really seen it broadly used. Example (wet lab portion):
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
Metagenomic DNA acquired!
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 years
Just got my first official invitation to review a paper 😃 I know this is common for most folks, but as someone who changed fields 4 times and went to biotech in between, I feel like I finally arrived.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
Normalize professors doing stupid mistakes.... I just ran an RNA gel with a DNA-only stain 🤦‍♀️
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
@mikerappe 4 of us went out and bought 2 each, planned such that each of the 2 were across the street from each other and within 2 miles of our home, and ordered the 2nd while we were picking up the first. We don't half ass stuff like this.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
#BLUESOUP update! So the awesome folks over at @seqcoast couldn't wait for my busy behind to look into the shotgun data, and went ahead and did some badass analyses (full PPT included 😅) that reveal a *likely* (*but still to be confirmed*) culprit.... drumroll 🥁🥁... 1/5
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
Blue beef soup swab, stab in beef bullion agar, and metagenomic DNA on its way to @ATinyGreenCell !!
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
And now.... ::drumroll::... the results! (rank order) 3/
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Dr. Elinne Becket - @bielleogy on all platforms
1 year
Please don't snitch tag the burger companies 😅 Many of their accounts are terrifyingly trollerific and I'm low key scared. 4/4
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
Programs that have a GPA cutoff and GRE requirements: you have no idea some of the amazing students you're missing out on. I meet them every day. Please consider being more flexible on these.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 years
You know what really grinds my gears? When people (not tasked to do so) use poster presentations as an opportunity to grill/quiz students. Especially undergrads.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
Suggested to my department to potentially switch our shared -80°C freezers to -70°C to reduce energy and increase longevity... they asked for any papers where people have tested this and sample preservation efficacy?
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
If there's one thing I regret from my scientific training, it's that I didn't take more stats classes.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
My student asked a comp sci MSc student how to do something in Finder on a Linux machine. MSc student: "you're making me relearn things in Finder. I normally never leave the terminal." My student: "Well, we're glad we could help you come out of your shell." I'm so proud.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
10 months
My friend has a heated toilet seat in their home and as a microbiologist I will never be able to enjoy that feeling.
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Dr. Elinne Becket - @bielleogy on all platforms
2 years
WHAT IS THIS SORCERY
@asmith83
Adam Smith
2 years
wait are you kidding me
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Dr. Elinne Becket - @bielleogy on all platforms
3 years
I'm so proud and in awe. Two of our lab's undergrads built a shaking water bath connected to heating and cooling units, programmed to mimic live coastal temps and lighting conditions. Our first test run, mimicking temps at the Scripps pier:
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
I'm never forgiving @ATinyGreenCell for this
@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
@ATinyGreenCell @Leao_pel I'm never forgiving you for this.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 month
@manischwitzmami Aww what a loyal pupper!
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
Trying to grow some myself in the mean time using beef bullion agar that smells like Top Ramen 😅 #BlueSoup
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 years
Looking around at my students, colleagues, and looking in a mirror.... Something's gotta give. We're all burning out. And it's not just the pandemic. It's how things have changed that expectations in life and work are more and more and more... This isn't healthy.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 years
As a new PI working to put out our lab's first research publication... I gotta admit I'm deeply terrified of disappointing all of you 😞 Trying to get over it, but it's a huge emotional hurdle.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
Look what just arrived in the mail from the soupmaker herself 🤣🤣🤣 My mom is freaking hilarious.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 month
@haonsregge Poor thing would be like I NEED TO STOP FOR FOOD AND NAPS
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Dr. Elinne Becket - @bielleogy on all platforms
1 year
@JosephHarrisBU Authors 3 and 4 declare no conflict of interest. Authors 1 and 2 are from California and therefore possibly have inextricable allegiances. Funding sources include our own bank accounts. No ketchup was provided during sample collection.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
Someone asked how we controlled for burger freshness
@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
@mikerappe 4 of us went out and bought 2 each, planned such that each of the 2 were across the street from each other and within 2 miles of our home, and ordered the 2nd while we were picking up the first. We don't half ass stuff like this.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
4 years
For the grad students/trainees on the path to prof, in case you need to hear this, there is a big difference between different types of prof positions, and the different types of unis. A thread on one person's experience at a "PUI". 1/10
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
8 months
Colleague brought a shark-fruiterie board to our brewery gathering 😆
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Dr. Elinne Becket - @bielleogy on all platforms
2 months
SciTwitter really needed something like rat dck to bring us back to our natural state.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 years
We really need to dispel with the notion that thesis committees are/should be adversarial. When we agree to be on a committee, we are taking the responsibility to guide and *support* someone's career development. We are their mentor too.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
@REDL1NK In-n-out fries, because they're tasteless 😅
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
3 years
I've endured anywhere from harassment to attempted career sabotage to assault based on how someone interpreted my appearance in the workplace. I will not allow others to perpetuate this garbage on my students and colleagues and blaming it on them. This needs to stop.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
1 year
Growth after 24h. There's some trace growth on the plate incubated at 4°C but hard to see from photo
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Dr. Elinne Becket - @bielleogy on all platforms
1 year
I don't want to get anyone excited but the #BlueSoup 16S V4 lib (with other samples) is running! Data tomorrow! Shotgun data come next week!
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 years
Ten years ago today, I received my doctoral hood from this man, who has remained my mentor to this day. Upon joining his lab, he took me under his wing, taught me everything he knew about bacterial genetics, took me to every meeting he could, introduced me to... 1/3
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Dr. Elinne Becket - @bielleogy on all platforms
3 years
I find myself telling my grad student to use 50 mL conicals sparingly so we don't get any cats shipped to us.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
2 years
I am (yet again) trying to help a student repeat methods in a series of publications that have crucial methodological information missing from them. We need to prioritize clarity and reproducibility of methods in publications. This should not be acceptable.
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Dr. Elinne Becket - @bielleogy on all platforms
3 years
Hi SciTwitter fam, can you please share microbiology PhD programs that don't have a GPA cutoff? I see so many stellar students that had twisty roads to this point in their career path, & it's heartbreaking and wrong that their GPAs are precluding them from even being considered.
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Dr. Elinne Becket - @bielleogy on all platforms
1 year
THREE TIMES.
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Dr. Elinne Becket - @bielleogy on all platforms
1 year
Alright we've figured out how the recipe will appear in the #BlueSoup paper 🤣
@WHB_Masselink
Wouter Masselink 🇳🇱 🇦🇺 🇦🇹 🇪🇺
1 year
@breakliquid @bielleogy @ATinyGreenCell “Recipe available upon reasonable request” 😂
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Dr. Elinne Becket - @bielleogy on all platforms
1 year
As grad apps are approaching, a gentle reminder to PIs to think kindly on students reaching out last minute. They may not have known this was an option, or may have needed time to muster the courage to reach out. I see this daily among even the most eager candidates.
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Dr. Elinne Becket - @bielleogy on all platforms
1 year
Great when you have undergrads developing antibiotic resistance gene PCR assays and literally every locus comes up positive in the first aliquot of local wastewater...
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Dr. Elinne Becket - @bielleogy on all platforms
1 year
Since this is of great debate, no there is not cabbage, beets, garlic (surprising given my family uses it in everything), tomatoes, or soy milk in this recipe. There's definitely at least 1 carrot though.
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
6 months
::adds to course material::
@RMisla
Ramon Misla David
6 months
A friend sent me the updated scientific method
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Dr. Elinne Becket - @bielleogy on all platforms
1 year
FEAR NOT, EVERYONE! The chemists are on it! #BlueSoup
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Dr. Elinne Becket - @bielleogy on all platforms
1 year
The more I fester the more I'm annoyed by that 16-hrs-to-write-a-grant tweet. As someone who has to juggle multiple courses/semester (no TAs) + service + guiding ugrads/master's students in research, we simply don't have time to constantly & deeply think about our research...
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Dr. Elinne Becket - @bielleogy on all platforms
1 year
Welp, Blue Soup analysis is gonna have to wait a bit longer. Time to sleep as much as I can now. (Overall feeling not terrible, similar symptoms to when the boosters kicked my butt).
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@bielleogy
Dr. Elinne Becket - @bielleogy on all platforms
4 years
Excellent commentary. Read beyond the headline, it's not what you think. #productivestupidity #scicomm
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Dr. Elinne Becket - @bielleogy on all platforms
1 year
Anyone else tired of thinking?
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Dr. Elinne Becket - @bielleogy on all platforms
2 years
Many lab classes now in person are full of students who haven't been in a lab in 2 yrs, or have never been in a physical lab at all. Our students need our support, patience, and encouragement now more than ever. A kind word may go a long way for the ones who need to hear it most.
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Dr. Elinne Becket - @bielleogy on all platforms
3 years
Please RT: Looking to assemble a diverse group of early career scientists/PhD students in microbial genomics who are interested in giving guest zoom lectures to a ugrad/masters class Fridays this fall. Recommendations would be appreciated. Regretfully have no honorarium funds.
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Dr. Elinne Becket - @bielleogy on all platforms
12 days
3) While I will never be the person who will make a Nobel-esque discovery, I've trained, supported, and believed in hundreds of future faces of STEM that everyone else discounted at day 1. That is the legacy I want. They will be the ones changing the world. 4/n
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Dr. Elinne Becket - @bielleogy on all platforms
1 year
I forgot we had more witnesses to the genesis!
@kimdayers
Dr. Kimberly Ayers
1 year
@bielleogy WAIT I just put 2 and 2 together: this was the soup your mom made for the birthday dinner I was at??? I can not believe I was in the presence of the pre- #BlueSoup . Knew it before it was famous. Such greatness.
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